cellview import csv

Import measurements from the CSV file at PATH.

cellview import csv [OPTIONS] PATH

Full --help output

Usage: cellview import csv [OPTIONS] PATH

  Import measurements from the CSV file at PATH.

Options:
  --nucleus-channel CH        Name of the nucleus (DNA-segmentation) channel
                              as it appears in the input data, e.g. 'DAPI',
                              'Hoechst', 'H2B_RFP'. Plate/screen routes
                              default to the plate's channel annotation. CSV
                              route prompts interactively when omitted. Use
                              this flag to override the default or to run non-
                              interactively.
  --project PROJECT_ID        Existing project ID to import into. Skips the
                              interactive project prompt — useful when
                              importing several plates in one go.
  --experiment EXPERIMENT_ID  Existing experiment ID to import into. Skips the
                              interactive experiment prompt. Implies its
                              parent project, so --project is optional; when
                              both are given they must agree.
  --help                      Show this message and exit.

Arguments

PATH: PATH

Required.

Options

--nucleus-channel: TEXT

Name of the nucleus (DNA-segmentation) channel as it appears in the input data, e.g. DAPI, Hoechst, H2B_RFP. Plate/screen routes default to the plate’s channel annotation. CSV route prompts interactively when omitted. Use this flag to override the default or to run non-interactively.

--project: INTEGER

Existing project ID to import into. Skips the interactive project prompt — useful when importing several plates in one go.

--experiment: INTEGER

Existing experiment ID to import into. Skips the interactive experiment prompt. Implies its parent project, so --project is optional; when both are given they must agree.