cellview curate add

Validate an edit against the plate and append it to LOG.

cellview curate add [OPTIONS] LOG OP

Full --help output

Usage: cellview curate add [OPTIONS] LOG {link|unlink|set_parent|clear_parent|
                           swap|absorb|drop|event|set_outcome|exclude|note}

  Validate an edit against the plate and append it to LOG.

Options:
  --plate INTEGER                 OMERO plate id.  [required]
  --well TEXT                     Well the edit applies to.  [required]
  --cell TEXT                     Anchor FRAME:LABEL of the cell.  [required]
  --frame INTEGER                 Frame (link, unlink, swap, event).
  --frames TEXT                   Frame range FIRST:LAST (absorb, drop).
  --label INTEGER                 Raw label the cell continues as (link).
  --parent TEXT                   Anchor of the parent (set_parent).
  --other TEXT                    Anchor of the other cell (swap).
  --kind [mitosis|death|slippage]
                                  Event kind.
  --outcome TEXT                  Outcome (set_outcome).
  --text TEXT                     Note text, or exclusion reason.
  --reason TEXT                   Why the edit is made.
  --author [human|agent]          [default: human]
  --confirmed-by [human]          Who approved an agent's edit.
  --marker TEXT                   Mitotic marker channel for the repair.
                                  [default: Geminin]
  --help                          Show this message and exit.

Arguments

LOG: FILE

Required.

OP: CHOICE

Required.

Options

--plate: INTEGER

Required. OMERO plate id.

--well: TEXT

Required. Well the edit applies to.

--cell: TEXT

Required. Anchor FRAME:LABEL of the cell.

--frame: INTEGER

Frame (link, unlink, swap, event).

--frames: TEXT

Frame range FIRST:LAST (absorb, drop).

--label: INTEGER

Raw label the cell continues as (link).

--parent: TEXT

Anchor of the parent (set_parent).

--other: TEXT

Anchor of the other cell (swap).

--kind: CHOICE

Event kind.

--outcome: TEXT

Outcome (set_outcome).

--text: TEXT

Note text, or exclusion reason.

--reason: TEXT =

Why the edit is made.

--author: CHOICE = human

 

--confirmed-by: CHOICE

Who approved an agent’s edit.

--marker: TEXT = Geminin

Mitotic marker channel for the repair.