cellclass dataset

Convert cell images in DIR to a training dataset.

cellclass dataset [OPTIONS] DIR

Full --help output

Usage: cellclass dataset [OPTIONS] DIR

  Convert cell images in DIR to a training dataset.

Options:
  --name TEXT                     Output dataset name.  [default: rois]
  --out DIRECTORY                 Output dataset directory.
  --ignore TEXT                   Labels to ignore. Accepts one or more
                                  values.
  --duplicates / --no-duplicates  Log duplicates.
  --channels TEXT                 Channel names. Accepts one or more values.
  --single-label / --no-single-label
                                  Only use single-label masks.
  --help                          Show this message and exit.

Arguments

DIR: DIRECTORY

Required.

Options

--name: TEXT = rois

Output dataset name.

--out: DIRECTORY

Output dataset directory.

--ignore: TEXT = (‘unassigned’,)

Labels to ignore. Accepts one or more values.

--duplicates, --no-duplicates

Log duplicates.

--channels: TEXT

Channel names. Accepts one or more values.

--single-label, --no-single-label

Only use single-label masks.