cellclass

Train and evaluate cell-image classifiers.

cellclass [OPTIONS] COMMAND [ARGS]...

Full --help output

Usage: cellclass [OPTIONS] COMMAND [ARGS]...

  Train and evaluate cell-image classifiers.

Options:
  --version  Show the version and exit.
  --help     Show this message and exit.

Commands:
  batch    Generate training runs from BATCH.
  dataset  Convert cell images in DIR to a training dataset.
  extract  Extract a TorchScript model from training settings FILE.
  sample   Sample example images from DATASET.
  sbatch   Submit a CellClass training job to SLURM.
  test     Evaluate a trained model against a dataset.
  train    Train a model using an ROI dataset or resume from saved state.

Options

--version: Show the version and exit.

Commands

sample: Sample example images from DATASET.
dataset: Convert cell images in DIR to a training dataset.
extract: Extract a TorchScript model from training settings FILE.
batch: Generate training runs from BATCH.
test: Evaluate a trained model against a dataset.
sbatch: Submit a CellClass training job to SLURM.
train: Train a model using an ROI dataset or resume from saved state.