Struct DnaSeq 

pub struct DnaSeq(/* private fields */);

Validated, canonical uppercase IUPAC DNA.

Implementations

impl DnaSeq

pub fn new(sequence: impl AsRef<str>) -> Result<Self, DomainError>

Validate and canonicalize an IUPAC DNA sequence.

pub fn as_str(&self) -> &str

Return the canonical sequence.

pub fn aligned_complement_3to5(&self) -> String

Complement aligned to the forward reference, read left-to-right 3′→5′. This does not reverse the coordinate frame or return a 5′→3′ reverse complement.

pub fn len(&self) -> usize

Return the number of bases.

pub const fn is_empty(&self) -> bool

DNAgent sequences are never empty after construction.

pub fn slice(&self, start: usize, end: usize) -> Option<&str>

Return a checked zero-based, half-open sequence slice.

Trait Implementations

impl Clone for DnaSeq

fn clone(&self) -> DnaSeq

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for DnaSeq

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for DnaSeq

fn fmt(&self, formatter: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Eq for DnaSeq

impl Hash for DnaSeq

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for DnaSeq

fn eq(&self, other: &DnaSeq) -> bool

Equality operator ==.

fn ne(&self, other: &Rhs) -> bool

Inequality operator !=.

impl Serialize for DnaSeq

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for DnaSeq