---
name: omero-screen
description: >
  High-content image analysis pipeline for data stored in OMERO. Use when writing Python code that uses the omero_screen package.
compatibility: Requires Python >=3.12,<3.15.
---

# OMERO-Screen

High-content image analysis pipeline for data stored in OMERO

## Installation

```bash
pip install omero-screen
```

## API overview

### Pipeline

Running a plate through the analysis pipeline.

- `loops.plate_loop`
- `plate_dataset.PlateDataset`

### Metadata

Plate layout, channel names and channel roles.

- `metadata_parser.MetadataParser`
- `metadata_parser.resolve_channel_roles`

### Configuration

Environment files and logging setup.

- `config.set_env_vars`
- `config.configure_logging`

## Resources

- [Full documentation](https://hocheggerlab.github.io/omero-screen/)
- [llms.txt](llms.txt) — Indexed API reference for LLMs
- [llms-full.txt](llms-full.txt) — Comprehensive documentation for LLMs