# cellview review-queue


Sample cells per well and write a review queue for the Track Review widget.


``` bash
cellview review-queue [OPTIONS] ID
```


Cells present at `--start` are followed to `--stop` on the curated lineage (automatic repair plus `--log`). A fixed-seed random sample per well is drawn; flagged cells and an `--audit` fraction of unflagged ones are queued.


<span class="gd-details-chevron" aria-hidden="true"></span>Full --help output


    Usage: cellview review-queue [OPTIONS] ID

      Sample cells per well and write a review queue for the Track Review widget.

      Cells present at --start are followed to --stop on the curated lineage
      (automatic repair plus --log). A fixed-seed random sample per well is drawn;
      flagged cells and an --audit fraction of unflagged ones are queued.

    Options:
      --well TEXT                    Well to sample (repeatable).  [required]
      --start INTEGER                Frame at which cells are sampled.  [default:
                                     72]
      --stop INTEGER                 Last frame cells are followed to.  [default:
                                     168]
      --sample INTEGER RANGE         Cells per well.  [default: 50; x>=1]
      --audit FLOAT RANGE            Fraction of unflagged sampled cells queued as
                                     a random check.  [default: 0.2; 0<=x<=1]
      --seed INTEGER                 [default: 0]
      --mode [human|agent]           human: the agent proposes and the reviewer
                                     confirms. agent: the agent edits and decides
                                     alone (use a separate --out to compare runs).
                                     [default: human]
      --stationary-warn FLOAT RANGE  Warn when this fraction of a well's start
                                     cells is stationary yet expresses a reporter.
                                     [default: 0.05; 0<=x<=1]
      --log FILE                     Edit log to replay before following cells.
      --marker TEXT                  [default: Geminin]
      --out DIRECTORY                Directory for queue.json and sample.csv.
                                     [required]
      --help                         Show this message and exit.


# Arguments


`ID: INTEGER`  
Required.


# Options


`--well: TEXT`  
**Required.** Well to sample (repeatable).

`--start: INTEGER = 72`  
Frame at which cells are sampled.

`--stop: INTEGER = 168`  
Last frame cells are followed to.

`--sample: INTEGER RANGE = 50`  
Cells per well.

`--audit: FLOAT RANGE = 0.2`  
Fraction of unflagged sampled cells queued as a random check.

`--seed: INTEGER = 0`  
 

`--mode: CHOICE = human`  
human: the agent proposes and the reviewer confirms. agent: the agent edits and decides alone (use a separate `--out` to compare runs).

`--stationary-warn: FLOAT RANGE = 0.05`  
Warn when this fraction of a well's start cells is stationary yet expresses a reporter.

`--log: FILE`  
Edit log to replay before following cells.

`--marker: TEXT = Geminin`  
 

`--out: DIRECTORY`  
**Required.** Directory for queue.json and sample.csv.