# cellclass test


Evaluate a trained model against a dataset.


``` bash
cellclass test [OPTIONS] DATASET.NPZ
```


<span class="gd-details-chevron" aria-hidden="true"></span>Full --help output


    Usage: cellclass test [OPTIONS] dataset.npz

      Evaluate a trained model against a dataset.

    Options:
      --size INTEGER                  Number of images to use.
      --data-seed INTEGER             [default: 42]
      -d, --device TEXT               [default: cuda]
      --model [densenet121|densenet161|densenet169|densenet201|squeezenet1_0|shufflenet2x1_0|shufflenet2x1_5|shufflenet2x2_0|efficientnetb3|efficientnetb4|efficientnetb3s|efficientnetb4s|resenext50_32x4d|alexnet|alexnet_att|googlenet|googlenet_att|simplegooglenet|simplegooglenet_att|simplegooglenet_ch_att|simplegooglenet_ch_sp_att]
      -n, --name FILE                 Training checkpoint name.
      -w, --weights FILE              Model weights.
      -s, --script FILE               Model script.
      --testing-size FLOAT            [default: 0.2]
      --batch-size INTEGER            [default: 128]
      --num-workers INTEGER           [default: 0]
      --log-level INTEGER             [default: 20]
      --pin-memory / --no-pin-memory
      --reorder INTEGER               Reorder class labels.
      --plot-matrix / --no-plot-matrix
      --matrix-file TEXT              Save the confusion matrix image.
      --matrix-csv TEXT               Save the confusion matrix CSV.
      --help                          Show this message and exit.


# Arguments


`DATASET.NPZ: FILE`  
Required.


# Options


`--size: INTEGER = 0`  
Number of images to use.

`--data-seed: INTEGER = 42`  
 

`-d, --device: TEXT = cuda`  
 

`--model: CHOICE = densenet121`  
 

`-n, --name: FILE`  
Training checkpoint name.

`-w, --weights: FILE`  
Model weights.

`-s, --script: FILE`  
Model script.

`--testing-size: FLOAT = 0.2`  
 

`--batch-size: INTEGER = 128`  
 

`--num-workers: INTEGER = 0`  
 

`--log-level: INTEGER = 20`  
 

`--pin-memory, --no-pin-memory`  
 

`--reorder: INTEGER`  
Reorder class labels.

`--plot-matrix, --no-plot-matrix`  
 

`--matrix-file: TEXT`  
Save the confusion matrix image.

`--matrix-csv: TEXT`  
Save the confusion matrix CSV.