# cellclass


Train and evaluate cell-image classifiers.


``` bash
cellclass [OPTIONS] COMMAND [ARGS]...
```


<span class="gd-details-chevron" aria-hidden="true"></span>Full --help output


    Usage: cellclass [OPTIONS] COMMAND [ARGS]...

      Train and evaluate cell-image classifiers.

    Options:
      --version  Show the version and exit.
      --help     Show this message and exit.

    Commands:
      batch    Generate training runs from BATCH.
      dataset  Convert cell images in DIR to a training dataset.
      extract  Extract a TorchScript model from training settings FILE.
      sample   Sample example images from DATASET.
      sbatch   Submit a CellClass training job to SLURM.
      test     Evaluate a trained model against a dataset.
      train    Train a model using an ROI dataset or resume from saved state.


# Options


`--version`  
Show the version and exit.


# Commands


`sample`  
[Sample example images from DATASET.](../../reference/cli/sample.md)

`dataset`  
[Convert cell images in DIR to a training dataset.](../../reference/cli/dataset.md)

`extract`  
[Extract a TorchScript model from training settings FILE.](../../reference/cli/extract.md)

`batch`  
[Generate training runs from BATCH.](../../reference/cli/batch.md)

`test`  
[Evaluate a trained model against a dataset.](../../reference/cli/test.md)

`sbatch`  
[Submit a CellClass training job to SLURM.](../../reference/cli/sbatch.md)

`train`  
[Train a model using an ROI dataset or resume from saved state.](../../reference/cli/train.md)